![]() ![]() Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV). Rangwala SH, Kuznetsov A, Ananiev V, Asztalos A, Borodin E, Evgeniev V, Joukov V, Lotov V, Pannu R, Rudnev D, Shkeda A, Weitz EM, Schneider VA. NCBI Sequence Viewer uses third party tools and libraries. The link will open with three panels (an overview graphical panel a zoomed in graphical panel and a sequence panel) additionally, a marker is set at position 800. This link provides an example of how a viral genome can be shown. Applications CLC Genomics Workbench is used for genomics, transcriptomics, and epigenomics research. Viral genome: AC_000020, sequence viewport and marker CLC Genomics Workbench supports all the major next-generation sequencing platforms, including Oxford Nanopore, PacBio, IonTorrent, BGI/MGI, Illumina, as well as Sanger. This provides an overview of the diversity among the sequences in the alignment. This link will open with two views by default: a graphical panel showing the feature annotation on the sequence and a sequence panel providing the bases of the sequence itself. For a given set of aligned sequences it is possible to make a pairwise comparison in which each pair of sequences are compared to each other. ![]() This link shows a sample mRNA sequence from the Mammalian Genome Collection. Two panels are shown by default: an overview panel showing the density of annotated genes along with a select number of genes for reference and a zoomed in graphical view showing individual features on the record. This particular record shows the beta globin locus on chromosome 11. This link shows a reference genomic region, that is, a genomic region that has undergone substantial curation by staff at NCBI. Human reference genomic region: NG_000007 There are two panels shown by default: an overview panel showing the density of annotated genes along with a select number of genes for reference and a zoomed in graphical view showing a region of the chromosome itself. This link provides a look at human chromosome 1. Embedding the NCBI Sequence View in Web Content ![]()
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